Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

CA Bladder Dyrskjot Cluster Number 13 (167 genes) This page contains all miRNA mediated regulation and functional enrichment for CA Bladder Dyrskjot cluster number 13. Information about bladder cancer can be found on Wikipedia, and further information about the "CA Bladder Dyrskjot" dataset can be found in Dyrskjot et al., 2004. Inferred miRNA Mediated Regulation Weeder-miRvestigator PITA TargetScan hsa-mir-548k zzz999 hsa-mir-548c-3p Gene Ontology Enrichment GO ID GO Term Annotated Genes in Cluster GO:0006396 RNA processing 19 GO:0006397 mRNA processing 15 GO:0006532 aspartate biosynthetic process 2 GO:0008152 metabolic process 115 GO:0008380 RNA splicing 15 GO:0019550 glutamate catabolic process to aspartate 2 GO:0019551 glutamate catabolic process to 2-oxoglutarate 2 GO:0044237 cellular metabolic process 108 GO:0044238 primary metabolic process 108 Overlap Between miRNA Target Genes and Enriched Gene Ontology Annotations miRNA Method GO ID GO Term Overlap GO Annotated Genes Cluster Size miRNA Targets Genes P-Value hsa-mir-548c-3p TargetScan GO:0006396 RNA processing 12 19 167 98 0.2545276 hsa-mir-548k miRvestigator GO:0006396 RNA processing 17 19 167 155 0.5928453 hsa-mir-548c-3p TargetScan GO:0006397 mRNA processing 10 15 167 98 0.1761596 hsa-mir-548k miRvestigator GO:0006397 mRNA processing 14 15 167 155 0.3102592 hsa-mir-548c-3p TargetScan GO:0006532 aspartate biosynthetic process 2 2 167 98 0.0 hsa-mir-548k miRvestigator GO:0006532 aspartate biosynthetic process 2 2 167 155 0.0 hsa-mir-548c-3p TargetScan GO:0008152 metabolic process 67 115 167 98 0.4964794 hsa-mir-548k miRvestigator GO:0008152 metabolic process 104 115 167 155 0.9341439 hsa-mir-548c-3p TargetScan GO:0008380 RNA splicing 10 15 167 98 0.1761596 hsa-mir-548k miRvestigator GO:0008380 RNA splicing 14 15 167 155 0.3102592 hsa-mir-548c-3p TargetScan GO:0019550 glutamate catabolic process to aspartate 2 2 167 98 0.0 hsa-mir-548k miRvestigator GO:0019550 glutamate catabolic process to aspartate 2 2 167 155 0.0 hsa-mir-548c-3p TargetScan GO:0019551 glutamate catabolic process to 2-oxoglutarate 2 2 167 98 0.0 hsa-mir-548k miRvestigator GO:0019551 glutamate catabolic process to 2-oxoglutarate 2 2 167 155 0.0 hsa-mir-548c-3p TargetScan GO:0044237 cellular metabolic process 63 108 167 98 0.482793 hsa-mir-548k miRvestigator GO:0044237 cellular metabolic process 98 108 167 155 0.8636098 hsa-mir-548c-3p TargetScan GO:0044238 primary metabolic process 62 108 167 98 0.6124133 hsa-mir-548k miRvestigator GO:0044238 primary metabolic process 97 108 167 155 0.964692

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.